C T G A : Cyamopsis tetragonoloba
Genomic Atlas

Advanced genomic analysis platform for cluster bean research, discovery, and functional annotation

🔎

Gene Search

Search for gene expression data, functional annotations, and genomic positions. Enter a gene ID to explore detailed information.

BLAST Search

Search for similar sequences in the guar genome using BLAST. Enter a protein or nucleotide sequence in FASTA format.

E-value threshold:
🔗

GO Analysis

Gene Ontology enrichment analysis using guar database Open GO Analysis

Sequence Extractor

Extract genomic sequences by coordinates. Input chromosome and position range to get FASTA sequence.

Open Tool
🔴🔵

Heatmap Generator

Create expression heatmaps for multiple genes. Compare expression patterns across all samples simultaneously.

Create Heatmap

Download Genomic Data Files

Download the complete dataset used in this genomic resource for your own analysis and research.

🧬

Genome Annotation

Complete gene annotation in GFF3 format with gene models, mRNA, CDS, and genomic features.

Download annotation.gff3
📊

Expression Data

TPM expression matrix for all genes across all samples and experimental conditions.

Download tpm_matrix.csv
🥚

eggNOG Annotations

Comprehensive functional annotations from eggNOG including GO terms, KEGG pathways, and protein families.

Download test.emapper.annotations
🌿

Mercator Annotations

Functional annotations from Mercator tool with MapMan BIN codes and metabolic pathway assignments.

Download mercator_final.csv

Data Description

annotation.gff3

Genome annotation file in GFF3 format containing gene models, exon coordinates, CDS regions, and other genomic features.

tpm_matrix.csv

Transcripts Per Million (TPM) expression matrix with genes as rows and samples as columns. Contains normalized expression values across all experimental conditions.

test.emapper.annotations

eggNOG-mapper annotations providing Gene Ontology terms, KEGG pathways, COG categories, and protein family information.

mercator_final.csv

Mercator4 functional annotations with MapMan BIN codes for plant-specific metabolic pathways and functional categories.